Instytut Podstawowych Problemów Techniki
Polskiej Akademii Nauk

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Aiguo Han

University of Illinois at Urbana-Champaign (US)

Ostatnie publikacje
1.  Byra M., Han A., Boehringer A.S., Zhang Y.N., O'Brien Jr W.D., Erdman Jr J.W., Loomba R., Sirlin C.B., Andre M., Liver fat assessment in multiview sonography using transfer learning with convolutional neural networks, Journal of Ultrasound in Medicine, ISSN: 0278-4297, DOI: 10.1002/jum.15693, pp.1-10, 2021

Streszczenie:
Objectives - To develop and evaluate deep learning models devised for liver fat assessment based on ultrasound (US) images acquired from four different liver views: transverse plane (hepatic veins at the confluence with the inferior vena cava, right portal vein, right posterior portal vein) and sagittal plane (liver/kidney). Methods - US images (four separate views) were acquired from 135 participants with known or suspected nonalcoholic fatty liver disease. Proton density fat fraction (PDFF) values derived from chemical shift-encoded magnetic resonance imaging served as ground truth. Transfer learning with a deep convolutional neural network (CNN) was applied to develop models for diagnosis of fatty liver (PDFF ≥ 5%), diagnosis of advanced steatosis (PDFF ≥ 10%), and PDFF quantification for each liver view separately. In addition, an ensemble model based on all four liver view models was investigated. Diagnostic performance was assessed using the area under the receiver operating characteristics curve (AUC), and quantification was assessed using the Spearman correlation coefficient (SCC). Results - The most accurate single view was the right posterior portal vein, with an SCC of 0.78 for quantifying PDFF and AUC values of 0.90 (PDFF ≥ 5%) and 0.79 (PDFF ≥ 10%). The ensemble of models achieved an SCC of 0.81 and AUCs of 0.91 (PDFF ≥ 5%) and 0.86 (PDFF ≥ 10%). Conclusion - Deep learning-based analysis of US images from different liver views can help assess liver fat.

Słowa kluczowe:
attention mechanism, convolutional neural networks, deep learning, nonalcoholic fatty liver disease, proton density fat fraction, ultrasound images

Afiliacje autorów:
Byra M. - IPPT PAN
Han A. - University of Illinois at Urbana-Champaign (US)
Boehringer A.S. - University of California (US)
Zhang Y.N. - University of California (US)
O'Brien Jr W.D. - inna afiliacja
Erdman Jr J.W. - University of Illinois at Urbana-Champaign (US)
Loomba R. - University of California (US)
Sirlin C.B. - University of California (US)
Andre M. - University of California (US)
70p.
2.  Han A., Byra M., Heba E., Andre M.P., Erdman J.W.Jr., Loomba R., Sirlin C.B., O'Brien W.D.Jr., Noninvasive diagnosis of nonalcoholic fatty liver disease and quantification of liver fat with radiofrequency ultrasound data using one-dimensional convolutional neural networks, Radiology, ISSN: 0033-8419, DOI: 10.1148/radiol.2020191160, Vol.295, No.2, pp.342-350, 2020

Streszczenie:
Background: Radiofrequency ultrasound data from the liver contain rich information about liver microstructure and composition. Deep learning might exploit such information to assess nonalcoholic fatty liver disease (NAFLD). Purpose: To develop and evaluate deep learning algorithms that use radiofrequency data for NAFLD assessment, with MRI-derived proton density fat fraction (PDFF) as the reference. Materials and Methods: A HIPAA-compliant secondary analysis of a single-center prospective study was performed for adult participants with NAFLD and control participants without liver disease. Participants in the parent study were recruited between February 2012 and March 2014 and underwent same-day US and MRI of the liver. Participants were randomly divided into an equal number of training and test groups. The training group was used to develop two algorithms via cross-validation: a classifier to diagnose NAFLD (MRI PDFF ≥ 5%) and a fat fraction estimator to predict MRI PDFF. Both algorithms used one-dimensional convolutional neural networks. The test group was used to evaluate the classifier for sensitivity, specificity, positive predictive value, negative predictive value, and accuracy and to evaluate the estimator for correlation, bias, limits of agreements, and linearity between predicted fat fraction and MRI PDFF. Results: A total of 204 participants were analyzed, 140 had NAFLD (mean age, 52 years ± 14 [standard deviation]; 82 women) and 64 were control participants (mean age, 46 years ± 21; 42 women). In the test group, the classifier provided 96% (95% confidence interval [CI]: 90%, 99%) (98 of 102) accuracy for NAFLD diagnosis (sensitivity, 97% [95% CI: 90%, 100%], 68 of 70; specificity, 94% [95% CI: 79%, 99%], 30 of 32; positive predictive value, 97% [95% CI: 90%, 99%], 68 of 70; negative predictive value, 94% [95% CI: 79%, 98%], 30 of 32). The estimator-predicted fat fraction correlated with MRI PDFF (Pearson r = 0.85). The mean bias was 0.8% (P = .08), and 95% limits of agreement were -7.6% to 9.1%. The predicted fat fraction was linear with an MRI PDFF of 18% or less (r = 0.89, slope = 1.1, intercept = 1.3) and nonlinear with an MRI PDFF greater than 18%. Conclusion: Deep learning algorithms using radiofrequency ultrasound data are accurate for diagnosis of nonalcoholic fatty liver disease and hepatic fat fraction quantification when other causes of steatosis are excluded.

Afiliacje autorów:
Han A. - University of Illinois at Urbana-Champaign (US)
Byra M. - IPPT PAN
Heba E. - inna afiliacja
Andre M.P. - University of California (US)
Erdman J.W.Jr. - University of Illinois at Urbana-Champaign (US)
Loomba R. - University of California (US)
Sirlin C.B. - University of California (US)
200p.

Abstrakty konferencyjne
1.  Byra M., Wong J., Shah S., Han A., O Brien W., Du J., Chang E., Andre M., High-frequency quantitative ultrasound and B-mode analysis for characterization of peripheral nerves including carpal tunnel syndrome, ASA, 178th Meeting of the Acoustical Society of America, 2019-12-02/12-06, San Diego (US), DOI: 10.1121/1.5136729, Vol.146, No.4, pp.2809-2809, 2019

Streszczenie:
We investigated the use of high-frequency quantitative ultrasound (QUS) and B-mode texture features to characterize ulnar and median nerve fascicles using a clinical scanner (Vevo MD) and a 30-MHz center-frequency probe. US correlation with histology was first investigated in the ulnar nerve in situ in cadaveric specimens. 85 fascicles were matched in B-mode images and the histology sections. Collagen and myelin concentrations were quantified from trichrome labeling, and backscatter coefficient (-24.89 ± 8.31 dB), attenuation coefficient (0.92 ± 0.04 dB/cm MHz), Nakagami parameter (1.01 ± 0.18) and entropy (6.92 ± 0.83) were calculated from ultrasound data. B-mode texture features were obtained via the gray-level co-occurrence matrix algorithm. Combined collagen and myelin concentration were significantly correlated with the backscatter coefficient (R = -0.68), entropy (R = -0.51), and several texture features. For the median nerve, we measured backscatter and morphology in 10 patients with carpal tunnel syndrome and 21 healthy volunteers. Significant differences (<0.01) between patients and controls and AUC 0.89–0.94 for QUS biomarkers were observed. Our study indicates that QUS may potentially provide useful information on structural components of even very small nerves (2 × 4 mm) and fascicles for diagnosing and monitoring injury, and surgical planning.

Afiliacje autorów:
Byra M. - IPPT PAN
Wong J. - University of California (US)
Shah S. - University of California (US)
Han A. - University of Illinois at Urbana-Champaign (US)
O Brien W. - University of Illinois at Urbana-Champaign (US)
Du J. - University of California (US)
Chang E. - University of California (US)
Andre M. - University of California (US)
2.  Byra M., Han A., Boehringer A., Zhang Y., Erdman J., Loomba R., Valasek M., Sirlin C., O Brien W., Andre M., Quantitative liver fat fraction measurement by multi-view sonography using deep learning and attention maps, ASA, 178th Meeting of the Acoustical Society of America, 2019-12-02/12-06, San Diego (US), DOI: 10.1121/1.5136936, Vol.146, No.4, pp.2809-1, 2019

Streszczenie:
Qualitative sonography is used to assess nonalcoholic fatty liver disease (NAFLD), an important health issue worldwide. We used B-mode image deep-learning to objectively assess NAFLD in 4 views of the liver (hepatic veins at confluence with inferior vena cava, right portal vein, right posterior portal vein and liver/kidney) in 135 patients with known or suspected NAFLD. Transfer learning with a deep convolutional neural network (CNN) was applied for quantifying fat fraction and diagnosing fatty liver (≥ 5%) using contemporaneous MRI-PDFF as ground truth. Single and multi-view learning approaches were compared. Class activation mapping generated attention maps to highlight regions important for deep learning-based recognition. The most accurate single view was hepatic veins, with area under the receiver operating characteristic curve (AUC) of 0.86 and Spearman’s rank correlation coefficient of 0.65. A multi-view ensemble of deep-learning models trained for each view separately improved AUC (0.93) and correlation coefficient (0.76). Attention maps highlighted regions known to be used by radiologists in their qualitative assessment, e.g., hepatic vein-parenchyma interface and liver-kidney interface. Machine learning of four liver views can automatically and objectively assess liver fat. Class activation mapping suggests that the CNN focuses on similar features as radiologists. [No. R01DK106419.]

Afiliacje autorów:
Byra M. - IPPT PAN
Han A. - University of Illinois at Urbana-Champaign (US)
Boehringer A. - University of California (US)
Zhang Y. - University of California (US)
Erdman J. - University of Illinois at Urbana-Champaign (US)
Loomba R. - University of California (US)
Valasek M. - University of California (US)
Sirlin C. - University of California (US)
O Brien W. - University of Illinois at Urbana-Champaign (US)
Andre M. - University of California (US)

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